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生物信息学

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王晓飞

作者: 阅读次数: 日期:2024-10-09

2021年6月毕业于东北师范大学遗传学专业,获理学博士学位。2021年11月-2024年8月于中国科学院遗传与发育生物学研究所博士后流动站开展博士后合作研究。2024年9月进入3344体育官方网站工作。主要从事植物基因组、群体基因组、蛋白组、转录组、表观组等多组学分析及多倍体进化的相关研究。近年来以第一作者及共同作者身份在《SCIENCE CHINA Life Sciences》、《Molecular Biology and Evolution》、《Plant Genome》、《Proceedings of the National Academy of Sciences》、《Molecular Plant》等学术期刊发表论文。

近年来发表的代表性论文(#表示共同第一;*表示通讯作者)

[1] Haofei Luo#, Xiaofei Wang#, Changqing You#, Xuedan Wu#, Duofeng Pan#, Zhiyao Lv#, Tong Li, Dongmei Zhang, Zhongbao Shen, Xiaodong Zhang, Guodao Liu, Kaixuan He, Qingtong Ye, Yajun Jia, Qinghua Zhao, Xian Deng, Xiaofeng Cao*, Xianwei Song*, and Gai Huang*, Telomere-to-telomere genome of the allotetraploid legume Sesbania cannabina reveals transposon-driven subgenome divergence and mechanisms of alkaline stress tolerance, SCIENCE CHINA Life Sciences, 2024, 67(1): 149-160.

[2] Changping Li#, Xiaofei Wang#, Yaxian Xiao, Xuhan Sun, Jinbin Wang, Xuan Yang, Yuchen Sun, Yan Sha, Ruili Lv, Yanan Yu, Baoxu Ding, Zhibin Zhang, Ning Li, Tianya Wang, Jonathan F Wendel, Bao Liu, Lei Gong*, Coevolution in Hybrid Genomes: Nuclear-Encoded Rubisco Small Subunits and Their Plastid-Targeting Translocons Accompanying Sequential Allopolyploidy Events in Triticum, Molecular Biology and Evolution, 2020, 37(12): 3409-3422.

[3] Xiaofei Wang, Qianli Dong, Xiaochong Li, Anzhi Yuliang, Yanan Yu, Ning Li, Bao Liu*, Lei Gong*, Cytonuclear Variation of Rubisco in Synthesized Rice Hybrids and Allotetraploids, Plant Genome, 2017, 10(3).

[4] Tong Li, Shanjie Tang, Wei Li, Shuaibin Zhang, Jianli Wang, Duofeng Pan, Zhelong Lin, Xuan Ma, Yanan Chang, Bo Liu, Jing Sun, Xiaofei Wang, Mengjie Zhao, Changqing You, Haofei Luo, Meijia Wang, Xingguo Ye, Jixian Zhai, Zhongbao Shen, Huilong Du, Xianwei Song*, Gai Huang*, and Xiaofeng Cao*, Genome evolution and initial breeding of the Triticeae grass Leymus chinensis dominating the Eurasian Steppe, Proceedings of the National Academy of Sciences, 2023, 120(44): e2308984120.

[5] Xiaochong Li, Jinbin Wang, Yanan Yu, Guo Li, Jinpeng Wang, Changping Li, Zixian Zeng, Ning Li, Zhibin Zhang, Qianli Dong, Yiyang Yu, Xiaofei Wang, Tianya Wang, Corrinne E. Grover, Bin Wang, Bao Liu*, Jonathan F. Wendel*, Lei Gong*, Genomic rearrangements and evolutionary changes in 3D chromatin topologies in the cotton tribe (Gossypieae), BMC Biology, 2023, 21(1): 56.

[6] inbin Wang, Xiaochong Li, Qianli Dong, Changping Li, Juzuo Li, Ning Li, Baoxu Ding, Xiaofei Wang, Yanan Yu, Tianya Wang, Zhibin Zhang, Yiyang Yu, Man Lang, Zixian Zeng*, Bao Liu*, Lei Gong*, Chromatin architectural alterations due to null mutation of a major CG methylase in rice, Journal of Integrative Plant Biology, 2022, 64(12): 2396-2410.

[7] Ruili Lv, Changyi Wang, Ruisi Wang, Xiaofei Wang, Jing Zhao, Bin Wang, Tariq Aslam, Fangpu Han*, Bao Liu*, Chromosomal instability and phenotypic variation in a specific lineage derived from a synthetic allotetraploid wheat, Frontiers in Plant Science, 2022, 13: 981234.

[8] Yue Sun, Xue Zhang, Shengnan Wang, Xuefeng Wu, Yingkui Wang, Xiaofei Wang, Jiahao Li, Zidong Liang, Ting Luo, Yiyang Yu, Ying Wu, Shuai Zhao, Lei Gong, Bao Liu*, Deli Wang*, Phenotypic plasticity couples with transcriptomic flexibility in Leymus chinensis under diverse edaphic conditions, Environmental and Experimental Botany, 2022, 197: 104838.

[9] Yue Sun, Ying Wu, Yangzhi Wang, Shengnan Wang, Xiaofei Wang, Guo Li, Xue Zhang, Zidong Liang, Jiahao Li, Lei Gong, Jonathan F Wendel, Deli Wang*, Bao Liu*, Homoploid F1 hybrids and segmental allotetraploids of rice subspecies are similarly more tolerant to N-deficiency than are parental lines, Journal of Experimental Botany, 2021, 72(15): 5612-5624.

[10] uzuo Li, Ning Li, Ling Zhu, Zhibin Zhang, Xiaochong Li, Jinbin Wang, Hongwei Xun, Jing Zhao, Xiaofei Wang, Tianya Wang, Hongyan Wang*, Bao Liu, Yu Li, Lei Gong*, Mutation of a major CG methylase alters genome-wide lncRNA expression in rice, G3-Genes Genomes Genetics, 2021, 11(4): jkab049.

[11] Changping Li, Xuhan Sun, Justin L Conover, Zhibin Zhang, Jinbin Wang, Xiaofei Wang, Xin Deng, Hongyan Wang, Bao Liu, Jonathan F Wendel*, Lei Gong*, Cytonuclear Coevolution following Homoploid Hybrid Speciation in Aegilops tauschii, Molecular Biology and Evolution, 2019, 36(2): 341-349.

[12] Qianli Dong, Ning Li, Xiaochong Li, Zan Yuan, Dejian Xie, Xiaofei Wang, Jianing Li, Yanan Yu, Jinbin Wang, Baoxu Ding, Zhibin Zhang, Changping Li, Yao Bian, Ai Zhang, Ying Wu, Bao Liu*, Lei Gong*, Genome-wide Hi-C analysis reveals extensive hierarchical chromatin interactions in rice, The Plant Journal, 2018, 94(6): 1141-1156.

[13] Xutong Wang, Lanjuan Hu, Xiaofei Wang, Ning Li, Chunming Xu, Lei Gong*, Bao Liu*, DNA methylation affects gene alternative splicing in plants: an example from rice, Molecular Plant, 2016, 9(2): 305-30